Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 NME2P1-201ENST00000426182 414 ntBASIC16.6■□□□□ 0.25
HMGB4Q8WW32 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 CR383656.12-201ENST00000549567 513 ntBASIC16.6■□□□□ 0.25
HMGB4Q8WW32 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 RN7SL828P-201ENST00000607615 303 ntBASIC16.6■□□□□ 0.25
HMGB4Q8WW32 AC008738.7-201ENST00000609744 511 ntBASIC16.6■□□□□ 0.25
HMGB4Q8WW32 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB4Q8WW32 AC006277.1-201ENST00000624348 1610 ntBASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RPL37AP1-201ENST00000412502 279 ntBASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AC009477.1-201ENST00000452936 217 ntBASIC16.59■□□□□ 0.25
HMGB4Q8WW32 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AC098859.1-201ENST00000502915 1238 ntBASIC16.59■□□□□ 0.25
HMGB4Q8WW32 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AC124947.2-201ENST00000547118 1133 ntBASIC16.59■□□□□ 0.25
HMGB4Q8WW32 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AC068880.1-201ENST00000507289 2297 ntBASIC16.59■□□□□ 0.25
HMGB4Q8WW32 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB4Q8WW32 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB4Q8WW32 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 COX5BP8-201ENST00000416911 349 ntBASIC16.58■□□□□ 0.24
HMGB4Q8WW32 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 HLA-J-202ENST00000469281 1241 ntBASIC16.58■□□□□ 0.24
HMGB4Q8WW32 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 AC009407.1-201ENST00000568958 598 ntBASIC16.58■□□□□ 0.24
HMGB4Q8WW32 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.58■□□□□ 0.24
HMGB4Q8WW32 AL008721.1-201ENST00000609964 604 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms