Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AC006538.1-201ENST00000567905 1585 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RPS2P36-201ENST00000456516 831 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 FAM86HP-204ENST00000513466 959 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 SDHAP3-202ENST00000515467 728 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AC092506.1-202ENST00000401022 528 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 BCRP2-202ENST00000447763 634 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 BCRP6-201ENST00000510112 632 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 BCRP7-201ENST00000511549 544 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RIT1-205ENST00000539040 919 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 QPRT-203ENST00000562473 579 ntTSL 3 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AC009542.2-202ENST00000619004 1067 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AC116353.5-201ENST00000638148 1699 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 KLF2P4-201ENST00000451959 1225 ntBASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RPS15-212ENST00000593052 629 ntTSL 2 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 RELA-227ENST00000615805 2236 ntTSL 5 BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CSMD3Q7Z407 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 KRT18P34-201ENST00000488218 1270 ntBASIC11.36□□□□□ -0.59
CSMD3Q7Z407 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 RHBDF1P1-201ENST00000427504 1941 ntBASIC11.36□□□□□ -0.59
CSMD3Q7Z407 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 AC105129.2-201ENST00000559536 390 ntBASIC11.36□□□□□ -0.59
CSMD3Q7Z407 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 CES3-203ENST00000543856 3178 ntTSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms