Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SYNE3Q6ZMZ3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SYNE3Q6ZMZ3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 MIR574-201ENST00000385209 96 ntBASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 KRT19P2-202ENST00000557173 1012 ntBASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SYNE3Q6ZMZ3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.55■□□□□ 0.72
SYNE3Q6ZMZ3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 AL512652.2-201ENST00000625156 1716 ntBASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 RNU1-129P-201ENST00000384064 167 ntBASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 PMS2P4-201ENST00000412466 1052 ntBASIC19.54■□□□□ 0.72
SYNE3Q6ZMZ3 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms