Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AC099336.1-201ENST00000417053 1171 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 CTBP2P5-201ENST00000454986 1264 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AL583810.1-201ENST00000553344 1045 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AC024267.1-201ENST00000582320 895 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 AC093726.1-201ENST00000608064 963 ntBASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC88AQ3V6T2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 AL033527.5-202ENST00000641632 1098 ntBASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC88AQ3V6T2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC88AQ3V6T2 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC88AQ3V6T2 TUBB1P2-201ENST00000422712 1306 ntBASIC20.02■□□□□ 0.79
CCDC88AQ3V6T2 TUBB1P1-201ENST00000503144 1300 ntBASIC20.02■□□□□ 0.79
CCDC88AQ3V6T2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
CCDC88AQ3V6T2 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC88AQ3V6T2 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 GOLGA2P4-201ENST00000441462 777 ntBASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC88AQ3V6T2 KRT8P39-201ENST00000396270 1433 ntBASIC20■□□□□ 0.79
CCDC88AQ3V6T2 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 NME6-203ENST00000415644 849 ntTSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC88AQ3V6T2 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms