Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 AC087499.5-201ENST00000452760 1342 ntBASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHROOM1Q2M3G4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 AC061975.2-201ENST00000581722 295 ntBASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHROOM1Q2M3G4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 GAPDHP21-201ENST00000450301 1010 ntBASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SHROOM1Q2M3G4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 PIN1P1-201ENST00000412108 996 ntBASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 AL596325.1-201ENST00000563991 1082 ntBASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 AC009118.2-201ENST00000613275 655 ntBASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHROOM1Q2M3G4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms