Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 PPT1-215ENST00000641471 2368 ntBASIC19.43■□□□□ 0.7
MRE11P49959 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
MRE11P49959 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 FRMD8P1-201ENST00000440433 1524 ntBASIC19.43■□□□□ 0.7
MRE11P49959 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC19.43■□□□□ 0.7
MRE11P49959 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
MRE11P49959 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 AP002383.4-201ENST00000442518 975 ntBASIC19.43■□□□□ 0.7
MRE11P49959 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.43■□□□□ 0.7
MRE11P49959 AC113404.2-201ENST00000507884 177 ntBASIC19.43■□□□□ 0.7
MRE11P49959 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.43■□□□□ 0.7
MRE11P49959 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.43■□□□□ 0.7
MRE11P49959 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.43■□□□□ 0.7
MRE11P49959 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
MRE11P49959 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
MRE11P49959 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC19.43■□□□□ 0.7
MRE11P49959 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.43■□□□□ 0.7
MRE11P49959 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MRE11P49959 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC19.42■□□□□ 0.7
MRE11P49959 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.42■□□□□ 0.7
MRE11P49959 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 AC023157.3-201ENST00000619086 2088 ntBASIC19.42■□□□□ 0.7
MRE11P49959 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.42■□□□□ 0.7
MRE11P49959 AP000523.1-201ENST00000398242 1049 ntBASIC19.42■□□□□ 0.7
MRE11P49959 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.42■□□□□ 0.7
MRE11P49959 SLC25A1P1-201ENST00000528351 927 ntBASIC19.42■□□□□ 0.7
MRE11P49959 AP002414.4-201ENST00000589764 1148 ntBASIC19.42■□□□□ 0.7
MRE11P49959 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
MRE11P49959 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
MRE11P49959 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
MRE11P49959 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
MRE11P49959 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.41■□□□□ 0.7
MRE11P49959 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.41■□□□□ 0.7
MRE11P49959 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
MRE11P49959 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.41■□□□□ 0.7
MRE11P49959 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.41■□□□□ 0.7
MRE11P49959 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.41■□□□□ 0.7
MRE11P49959 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
MRE11P49959 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MRE11P49959 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC19.4■□□□□ 0.7
MRE11P49959 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms