Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.66□□□□□ -0.06
CX3CR1P49238 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CX3CR1P49238 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CX3CR1P49238 AC008741.2-201ENST00000612792 3115 ntBASIC14.66□□□□□ -0.06
CX3CR1P49238 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.65□□□□□ -0.06
CX3CR1P49238 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CR1P49238 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CR1P49238 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
CX3CR1P49238 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CX3CR1P49238 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.65□□□□□ -0.06
CX3CR1P49238 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CR1P49238 TOLLIP-AS1-201ENST00000530897 939 ntBASIC14.65□□□□□ -0.06
CX3CR1P49238 AC091167.2-201ENST00000579581 588 ntBASIC14.65□□□□□ -0.06
CX3CR1P49238 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CR1P49238 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC14.65□□□□□ -0.06
CX3CR1P49238 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.65□□□□□ -0.06
CX3CR1P49238 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CR1P49238 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CR1P49238 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CX3CR1P49238 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.65□□□□□ -0.06
CX3CR1P49238 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
CX3CR1P49238 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.64□□□□□ -0.07
CX3CR1P49238 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 AC131009.4-201ENST00000624048 1740 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 ME2P1-201ENST00000426028 1970 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 AC005052.1-201ENST00000625181 2492 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.64□□□□□ -0.07
CX3CR1P49238 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 UNC93B7-201ENST00000509439 705 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 AC136632.2-201ENST00000512891 861 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 GGTLC5P-201ENST00000617623 998 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 MIR1199-201ENST00000621445 119 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CR1P49238 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 AL671710.1-201ENST00000610245 2349 ntBASIC14.64□□□□□ -0.07
CX3CR1P49238 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CX3CR1P49238 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CR1P49238 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 AC103702.1-201ENST00000548801 2630 ntBASIC14.63□□□□□ -0.07
CX3CR1P49238 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CR1P49238 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CX3CR1P49238 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
CX3CR1P49238 SNX33P1-201ENST00000592116 1762 ntBASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms