Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NOC2LP1-202ENST00000452600 2235 ntBASIC16.38■□□□□ 0.21
CXCL12P48061 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CXCL12P48061 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.37■□□□□ 0.21
CXCL12P48061 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CXCL12P48061 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.37■□□□□ 0.21
CXCL12P48061 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CXCL12P48061 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.37■□□□□ 0.21
CXCL12P48061 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
CXCL12P48061 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CXCL12P48061 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CXCL12P48061 CROCCP4-201ENST00000457096 498 ntBASIC16.37■□□□□ 0.21
CXCL12P48061 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CXCL12P48061 AC092337.1-201ENST00000568699 1129 ntBASIC16.37■□□□□ 0.21
CXCL12P48061 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.37■□□□□ 0.21
CXCL12P48061 MIR8072-201ENST00000614241 80 ntBASIC16.37■□□□□ 0.21
CXCL12P48061 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CXCL12P48061 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.37■□□□□ 0.21
CXCL12P48061 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CXCL12P48061 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CXCL12P48061 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 AL133338.1-201ENST00000565695 1517 ntBASIC16.36■□□□□ 0.21
CXCL12P48061 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 AC087289.5-201ENST00000586076 3175 ntBASIC16.36■□□□□ 0.21
CXCL12P48061 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CXCL12P48061 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.36■□□□□ 0.21
CXCL12P48061 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.36■□□□□ 0.21
CXCL12P48061 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.36■□□□□ 0.21
CXCL12P48061 BTNL10-201ENST00000595971 695 ntBASIC16.36■□□□□ 0.21
CXCL12P48061 AC020765.3-201ENST00000613051 740 ntBASIC16.36■□□□□ 0.21
CXCL12P48061 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CXCL12P48061 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CXCL12P48061 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.36■□□□□ 0.21
CXCL12P48061 SNX33P1-201ENST00000592116 1762 ntBASIC16.36■□□□□ 0.21
CXCL12P48061 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.36■□□□□ 0.21
CXCL12P48061 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CXCL12P48061 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.35■□□□□ 0.21
CXCL12P48061 CLK3P2-201ENST00000427566 1453 ntBASIC16.35■□□□□ 0.21
CXCL12P48061 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.35■□□□□ 0.21
CXCL12P48061 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CXCL12P48061 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.35■□□□□ 0.21
CXCL12P48061 BNIP3P42-201ENST00000454982 569 ntBASIC16.35■□□□□ 0.21
CXCL12P48061 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.35■□□□□ 0.21
CXCL12P48061 MIR4538-201ENST00000581377 78 ntBASIC16.35■□□□□ 0.21
CXCL12P48061 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.35■□□□□ 0.21
CXCL12P48061 BNIP3P29-201ENST00000598302 571 ntBASIC16.35■□□□□ 0.21
CXCL12P48061 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CXCL12P48061 AC011447.5-201ENST00000616168 564 ntBASIC16.35■□□□□ 0.21
CXCL12P48061 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CXCL12P48061 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms