Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX3P41225 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 AC092053.1-201ENST00000605787 1936 ntBASIC15.68■□□□□ 0.1
SOX3P41225 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 BCAR1-209ENST00000546196 1340 ntBASIC15.68■□□□□ 0.1
SOX3P41225 AC129492.6-201ENST00000611383 1305 ntBASIC15.68■□□□□ 0.1
SOX3P41225 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX3P41225 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX3P41225 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.67■□□□□ 0.1
SOX3P41225 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.67■□□□□ 0.1
SOX3P41225 RHOQP3-201ENST00000437982 621 ntBASIC15.67■□□□□ 0.1
SOX3P41225 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.67■□□□□ 0.1
SOX3P41225 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.67■□□□□ 0.1
SOX3P41225 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX3P41225 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX3P41225 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX3P41225 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX3P41225 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SOX3P41225 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX3P41225 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX3P41225 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX3P41225 MIR1233-2-201ENST00000408138 82 ntBASIC15.66■□□□□ 0.1
SOX3P41225 MIR1233-1-201ENST00000408722 82 ntBASIC15.66■□□□□ 0.1
SOX3P41225 FAM185BP-201ENST00000443595 716 ntBASIC15.66■□□□□ 0.1
SOX3P41225 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 DNAJB3-201ENST00000446806 729 ntBASIC15.66■□□□□ 0.1
SOX3P41225 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 AC107918.2-201ENST00000530817 355 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms