Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 FAM220CP-201ENST00000395253 831 ntBASIC16.76■□□□□ 0.27
PTPN4P29074 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.76■□□□□ 0.27
PTPN4P29074 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.76■□□□□ 0.27
PTPN4P29074 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 AL139288.1-201ENST00000623748 933 ntBASIC16.76■□□□□ 0.27
PTPN4P29074 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PTPN4P29074 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
PTPN4P29074 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.76■□□□□ 0.27
PTPN4P29074 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTPN4P29074 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PTPN4P29074 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 AC097374.2-201ENST00000618617 1306 ntBASIC16.75■□□□□ 0.27
PTPN4P29074 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN4P29074 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PTPN4P29074 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN4P29074 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN4P29074 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 KRT18P13-201ENST00000400056 1290 ntBASIC16.75■□□□□ 0.27
PTPN4P29074 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.75■□□□□ 0.27
PTPN4P29074 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.75■□□□□ 0.27
PTPN4P29074 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.75■□□□□ 0.27
PTPN4P29074 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.75■□□□□ 0.27
PTPN4P29074 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.75■□□□□ 0.27
PTPN4P29074 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PTPN4P29074 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PTPN4P29074 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTPN4P29074 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 ALOX12P2-203ENST00000570921 1945 ntBASIC16.74■□□□□ 0.27
PTPN4P29074 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.74■□□□□ 0.27
PTPN4P29074 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PTPN4P29074 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PTPN4P29074 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.74■□□□□ 0.27
PTPN4P29074 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
PTPN4P29074 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.74■□□□□ 0.27
PTPN4P29074 RPS2P1-201ENST00000434010 821 ntBASIC16.74■□□□□ 0.27
PTPN4P29074 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.74■□□□□ 0.27
PTPN4P29074 OR7E14P-202ENST00000530490 1290 ntBASIC16.74■□□□□ 0.27
PTPN4P29074 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.74■□□□□ 0.27
PTPN4P29074 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.74■□□□□ 0.27
PTPN4P29074 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms