Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF40O75150 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
RNF40O75150 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF40O75150 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF40O75150 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RNF40O75150 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF40O75150 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF40O75150 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RNF40O75150 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.02■□□□□ 0.47
RNF40O75150 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 DBET-201ENST00000630918 3363 ntBASIC18.01■□□□□ 0.47
RNF40O75150 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
RNF40O75150 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.01■□□□□ 0.47
RNF40O75150 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.01■□□□□ 0.47
RNF40O75150 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.01■□□□□ 0.47
RNF40O75150 AC064836.3-201ENST00000607928 673 ntBASIC18.01■□□□□ 0.47
RNF40O75150 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
RNF40O75150 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.01■□□□□ 0.47
RNF40O75150 PGM5P2-202ENST00000637225 1043 ntBASIC18.01■□□□□ 0.47
RNF40O75150 AC134684.3-201ENST00000641758 218 ntBASIC18.01■□□□□ 0.47
RNF40O75150 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
RNF40O75150 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
RNF40O75150 AC092364.2-201ENST00000596710 2692 ntBASIC18.01■□□□□ 0.47
RNF40O75150 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF40O75150 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
RNF40O75150 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 LINC02012-201ENST00000608206 1725 ntBASIC18.01■□□□□ 0.47
RNF40O75150 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF40O75150 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
RNF40O75150 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
RNF40O75150 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18■□□□□ 0.47
RNF40O75150 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 AC092053.1-201ENST00000605787 1936 ntBASIC18■□□□□ 0.47
RNF40O75150 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
RNF40O75150 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18■□□□□ 0.47
RNF40O75150 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18■□□□□ 0.47
RNF40O75150 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18■□□□□ 0.47
RNF40O75150 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
RNF40O75150 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18■□□□□ 0.47
RNF40O75150 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18■□□□□ 0.47
RNF40O75150 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18■□□□□ 0.47
RNF40O75150 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 AC073621.1-201ENST00000392730 636 ntBASIC18■□□□□ 0.47
RNF40O75150 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 HNRNPA1P28-201ENST00000424481 961 ntBASIC18■□□□□ 0.47
RNF40O75150 AC108751.1-201ENST00000490852 363 ntBASIC18■□□□□ 0.47
RNF40O75150 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18■□□□□ 0.47
RNF40O75150 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18■□□□□ 0.47
RNF40O75150 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18■□□□□ 0.47
RNF40O75150 AC104640.1-201ENST00000562617 2109 ntBASIC18■□□□□ 0.47
RNF40O75150 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18■□□□□ 0.47
RNF40O75150 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 KRT8P47-201ENST00000604727 1398 ntBASIC18■□□□□ 0.47
RNF40O75150 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18■□□□□ 0.47
RNF40O75150 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
RNF40O75150 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF40O75150 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
RNF40O75150 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms