Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.21■□□□□ 0.19
SDC3O75056 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.21■□□□□ 0.19
SDC3O75056 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC3O75056 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC3O75056 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SDC3O75056 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.21■□□□□ 0.18
SDC3O75056 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.21■□□□□ 0.18
SDC3O75056 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.21■□□□□ 0.18
SDC3O75056 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SDC3O75056 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SDC3O75056 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.21■□□□□ 0.18
SDC3O75056 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SDC3O75056 PP12613-201ENST00000424958 2230 ntBASIC16.21■□□□□ 0.18
SDC3O75056 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SDC3O75056 AC073439.1-201ENST00000624121 1774 ntBASIC16.21■□□□□ 0.18
SDC3O75056 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SDC3O75056 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SDC3O75056 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SDC3O75056 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.2■□□□□ 0.18
SDC3O75056 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.2■□□□□ 0.18
SDC3O75056 HLA-H-201ENST00000383620 1096 ntBASIC16.2■□□□□ 0.18
SDC3O75056 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
SDC3O75056 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
SDC3O75056 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 TSSK5P-201ENST00000423978 907 ntBASIC16.2■□□□□ 0.18
SDC3O75056 MTND6P24-201ENST00000440466 518 ntBASIC16.2■□□□□ 0.18
SDC3O75056 CRB3P1-201ENST00000449338 276 ntBASIC16.2■□□□□ 0.18
SDC3O75056 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SDC3O75056 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.2■□□□□ 0.18
SDC3O75056 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SDC3O75056 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SDC3O75056 TUBB8P12-201ENST00000308911 1335 ntBASIC16.19■□□□□ 0.18
SDC3O75056 TUBB7P-202ENST00000428444 1305 ntBASIC16.19■□□□□ 0.18
SDC3O75056 TUBB8P7-204ENST00000567960 1332 ntBASIC16.19■□□□□ 0.18
SDC3O75056 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.19■□□□□ 0.18
SDC3O75056 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SDC3O75056 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.19■□□□□ 0.18
SDC3O75056 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
SDC3O75056 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 AC022144.1-201ENST00000602255 1580 ntBASIC16.19■□□□□ 0.18
SDC3O75056 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SDC3O75056 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.19■□□□□ 0.18
SDC3O75056 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.19■□□□□ 0.18
SDC3O75056 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.19■□□□□ 0.18
SDC3O75056 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.19■□□□□ 0.18
SDC3O75056 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.19■□□□□ 0.18
SDC3O75056 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.19■□□□□ 0.18
SDC3O75056 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
SDC3O75056 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.19■□□□□ 0.18
SDC3O75056 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.19■□□□□ 0.18
SDC3O75056 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SDC3O75056 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.19■□□□□ 0.18
SDC3O75056 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
SDC3O75056 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SDC3O75056 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
SDC3O75056 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SDC3O75056 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.18■□□□□ 0.18
SDC3O75056 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SDC3O75056 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 193.2 ms