Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 AC006001.1-201ENST00000325130 474 ntBASIC12.66□□□□□ -0.38
COL6A5A8TX70 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.66□□□□□ -0.38
COL6A5A8TX70 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 KRTAP10-13P-201ENST00000412914 571 ntBASIC12.66□□□□□ -0.38
COL6A5A8TX70 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 CU633904.3-201ENST00000624042 1029 ntBASIC12.66□□□□□ -0.38
COL6A5A8TX70 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AC015818.8-201ENST00000587907 1519 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 CNN2P8-201ENST00000421872 913 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 EEF1DP6-201ENST00000449232 372 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AC125604.1-201ENST00000496255 707 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AC061975.2-201ENST00000581722 295 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 MIR769-201ENST00000390225 118 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AC134915.1-201ENST00000426461 574 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 RPL13AP25-201ENST00000484130 612 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 AP001063.1-201ENST00000568332 529 ntBASIC12.65□□□□□ -0.38
COL6A5A8TX70 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL6A5A8TX70 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
COL6A5A8TX70 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL6A5A8TX70 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC12.65□□□□□ -0.39
COL6A5A8TX70 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 SPTLC1P5-201ENST00000450718 252 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 IMP3P2-201ENST00000489760 475 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 AC005702.4-201ENST00000618393 416 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 TOP3BP1-201ENST00000420768 1380 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms