Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SSX2IPQ9Y2D8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SSX2IPQ9Y2D8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.46
SSX2IPQ9Y2D8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
SSX2IPQ9Y2D8 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SSX2IPQ9Y2D8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
SSX2IPQ9Y2D8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.89■□□□□ 0.46
SSX2IPQ9Y2D8 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 AC138761.1-201ENST00000584393 385 ntBASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 AL390955.2-201ENST00000603032 514 ntBASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
SSX2IPQ9Y2D8 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AC190387.1-201ENST00000551683 408 ntBASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX2IPQ9Y2D8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX2IPQ9Y2D8 AC080080.1-201ENST00000625121 2420 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms