Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ZC3H4Q9UPT8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ZC3H4Q9UPT8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ZC3H4Q9UPT8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ZC3H4Q9UPT8 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 AC106872.11-201ENST00000605838 421 ntBASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 MIR6069-201ENST00000620069 79 ntBASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ZC3H4Q9UPT8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 GPAA1P2-201ENST00000417923 928 ntBASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 CSF2RBP1-201ENST00000447905 391 ntBASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 AC104596.2-201ENST00000512793 793 ntBASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ZC3H4Q9UPT8 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 RARRES2P5-201ENST00000564013 466 ntBASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 AL021920.2-201ENST00000624828 1351 ntBASIC19.92■□□□□ 0.78
ZC3H4Q9UPT8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ZC3H4Q9UPT8 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms