Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 FAM8A3P-201ENST00000427218 844 ntBASIC16.18■□□□□ 0.18
VPS4AQ9UN37 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AC009947.1-201ENST00000444350 727 ntBASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 SIGLEC30P-201ENST00000455569 941 ntBASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AC011467.4-201ENST00000594891 528 ntBASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AC064836.3-201ENST00000607928 673 ntBASIC16.18■□□□□ 0.18
VPS4AQ9UN37 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.18■□□□□ 0.18
VPS4AQ9UN37 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS4AQ9UN37 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 PMPCAP1-201ENST00000508114 1576 ntBASIC16.17■□□□□ 0.18
VPS4AQ9UN37 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS4AQ9UN37 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS4AQ9UN37 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms