Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 KLK8-202ENST00000320838 456 ntTSL 5 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 AC069262.1-201ENST00000539058 672 ntBASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 AC131009.4-201ENST00000624048 1740 ntBASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 AC012569.1-201ENST00000591191 1524 ntBASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPAP1Q9BWH6 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 KRT8P23-201ENST00000560090 1207 ntBASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 AP001350.2-201ENST00000625104 1094 ntBASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 AL391256.1-201ENST00000443260 1855 ntBASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPAP1Q9BWH6 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 MIR4745-201ENST00000577608 62 ntBASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.11■□□□□ 0.81
RPAP1Q9BWH6 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 SPDYE14P-201ENST00000442619 822 ntBASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 KLF2P3-201ENST00000451977 1087 ntBASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 AC093214.1-201ENST00000511688 1107 ntBASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 DUX4L27-201ENST00000554796 1261 ntBASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 LINC01225-203ENST00000563550 1244 ntBASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RPAP1Q9BWH6 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms