Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
CDCA3Q99618 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.11■□□□□ 0.33
CDCA3Q99618 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDCA3Q99618 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CDCA3Q99618 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.11■□□□□ 0.33
CDCA3Q99618 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDCA3Q99618 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDCA3Q99618 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CDCA3Q99618 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.1■□□□□ 0.33
CDCA3Q99618 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.1■□□□□ 0.33
CDCA3Q99618 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.1■□□□□ 0.33
CDCA3Q99618 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.1■□□□□ 0.33
CDCA3Q99618 FAM8A2P-201ENST00000528813 1142 ntBASIC17.1■□□□□ 0.33
CDCA3Q99618 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.1■□□□□ 0.33
CDCA3Q99618 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.1■□□□□ 0.33
CDCA3Q99618 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CDCA3Q99618 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 AC020763.4-201ENST00000623414 4170 ntBASIC17.1■□□□□ 0.33
CDCA3Q99618 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDCA3Q99618 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CDCA3Q99618 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDCA3Q99618 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.09■□□□□ 0.33
CDCA3Q99618 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDCA3Q99618 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDCA3Q99618 FAM86MP-201ENST00000340703 885 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CDCA3Q99618 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CDCA3Q99618 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.09■□□□□ 0.33
CDCA3Q99618 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.09■□□□□ 0.33
CDCA3Q99618 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.09■□□□□ 0.33
CDCA3Q99618 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.09■□□□□ 0.33
CDCA3Q99618 AC092552.1-201ENST00000547243 906 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 SNX29P1-201ENST00000548357 1007 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.09■□□□□ 0.33
CDCA3Q99618 AC025048.3-201ENST00000590609 569 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.09■□□□□ 0.33
CDCA3Q99618 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDCA3Q99618 AC005702.4-201ENST00000618393 416 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDCA3Q99618 CLK3P2-201ENST00000427566 1453 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 REXO1L6P-201ENST00000603433 1515 ntBASIC17.09■□□□□ 0.33
CDCA3Q99618 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDCA3Q99618 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDCA3Q99618 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDCA3Q99618 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDCA3Q99618 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDCA3Q99618 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDCA3Q99618 AC008764.6-201ENST00000595909 2069 ntBASIC17.08■□□□□ 0.33
CDCA3Q99618 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDCA3Q99618 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDCA3Q99618 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.08■□□□□ 0.33
CDCA3Q99618 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CDCA3Q99618 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.08■□□□□ 0.32
CDCA3Q99618 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDCA3Q99618 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDCA3Q99618 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDCA3Q99618 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.08■□□□□ 0.32
CDCA3Q99618 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CDCA3Q99618 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms