Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.6
SYNGAP1Q96PV0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 AC012313.1-201ENST00000593393 3059 ntBASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 AL035456.1-201ENST00000456064 1369 ntBASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SYNGAP1Q96PV0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 AL606495.2-201ENST00000605867 535 ntBASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNGAP1Q96PV0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 AC092068.3-201ENST00000587894 2016 ntBASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNGAP1Q96PV0 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms