Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 PTCHD3P3-201ENST00000403073 906 ntBASIC16.01■□□□□ 0.15
VMP1Q96GC9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 PMS2P1-201ENST00000431037 1228 ntBASIC16.01■□□□□ 0.15
VMP1Q96GC9 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 IGHV3-65-201ENST00000523210 341 ntBASIC16.01■□□□□ 0.15
VMP1Q96GC9 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 GGTLC5P-201ENST00000617623 998 ntBASIC16.01■□□□□ 0.15
VMP1Q96GC9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VMP1Q96GC9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
VMP1Q96GC9 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16■□□□□ 0.15
VMP1Q96GC9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16■□□□□ 0.15
VMP1Q96GC9 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
VMP1Q96GC9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VMP1Q96GC9 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16■□□□□ 0.15
VMP1Q96GC9 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16■□□□□ 0.15
VMP1Q96GC9 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16■□□□□ 0.15
VMP1Q96GC9 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16■□□□□ 0.15
VMP1Q96GC9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16■□□□□ 0.15
VMP1Q96GC9 AC009947.1-201ENST00000444350 727 ntBASIC16■□□□□ 0.15
VMP1Q96GC9 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16■□□□□ 0.15
VMP1Q96GC9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16■□□□□ 0.15
VMP1Q96GC9 AC034105.1-201ENST00000563488 319 ntBASIC16■□□□□ 0.15
VMP1Q96GC9 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16■□□□□ 0.15
VMP1Q96GC9 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16■□□□□ 0.15
VMP1Q96GC9 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 AL513523.2-202ENST00000427283 2040 ntBASIC16■□□□□ 0.15
VMP1Q96GC9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16■□□□□ 0.15
VMP1Q96GC9 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
VMP1Q96GC9 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VMP1Q96GC9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VMP1Q96GC9 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16■□□□□ 0.15
VMP1Q96GC9 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 KRT18P58-201ENST00000527480 1120 ntBASIC15.99■□□□□ 0.15
VMP1Q96GC9 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.99■□□□□ 0.15
VMP1Q96GC9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VMP1Q96GC9 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms