Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 AC021087.4-201ENST00000563761 564 ntBASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLHC1Q8NHS4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 AF238378.1-201ENST00000526806 358 ntBASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.02■□□□□ 0.16
CLHC1Q8NHS4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 AL512652.2-201ENST00000625156 1716 ntBASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.02■□□□□ 0.15
CLHC1Q8NHS4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 SAPCD2P3-201ENST00000455031 850 ntBASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 SCARNA2-201ENST00000458748 420 ntBASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 SLC25A6P2-201ENST00000497974 877 ntBASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 MPDU1-223ENST00000582151 728 ntBASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CLHC1Q8NHS4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms