Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AL022328.1-201ENST00000610050 478 ntBASIC17.3■□□□□ 0.36
CHD9Q3L8U1 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 MIR4706-201ENST00000582134 82 ntBASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AC026954.1-201ENST00000429771 1293 ntBASIC17.3■□□□□ 0.36
CHD9Q3L8U1 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.3■□□□□ 0.36
CHD9Q3L8U1 GGT4P-201ENST00000623672 1708 ntBASIC17.29■□□□□ 0.36
CHD9Q3L8U1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 AC026979.3-201ENST00000607315 403 ntBASIC17.29■□□□□ 0.36
CHD9Q3L8U1 MIR6069-201ENST00000620069 79 ntBASIC17.29■□□□□ 0.36
CHD9Q3L8U1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 AC006277.1-201ENST00000624348 1610 ntBASIC17.29■□□□□ 0.36
CHD9Q3L8U1 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHD9Q3L8U1 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 TDH-203ENST00000531764 1110 ntBASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 MIR4722-201ENST00000578292 60 ntBASIC17.28■□□□□ 0.36
CHD9Q3L8U1 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.28■□□□□ 0.36
CHD9Q3L8U1 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AC106872.11-201ENST00000605838 421 ntBASIC17.28■□□□□ 0.36
CHD9Q3L8U1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHD9Q3L8U1 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHD9Q3L8U1 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms