Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 AC087641.1-201ENST00000557561 1021 ntBASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 AL662844.4-201ENST00000606367 2838 ntBASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 AL512652.2-201ENST00000625156 1716 ntBASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 KRT8P39-201ENST00000396270 1433 ntBASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 FAM185BP-201ENST00000443595 716 ntBASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 AC092183.1-201ENST00000469884 875 ntBASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 ACTL9-202ENST00000612068 1252 ntBASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.27■□□□□ 0.2
PTCHD3Q3KNS1 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
PTCHD3Q3KNS1 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 BCAR1-209ENST00000546196 1340 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 HCG4-201ENST00000418983 998 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 MCCD1P2-201ENST00000423228 335 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC004967.1-201ENST00000453589 447 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 ALG1L5P-201ENST00000482043 771 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC004877.2-201ENST00000623941 599 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AP001350.2-201ENST00000625104 1094 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC134684.3-201ENST00000641758 218 ntBASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.26■□□□□ 0.19
PTCHD3Q3KNS1 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
PTCHD3Q3KNS1 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms