Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 TPM4P1-201ENST00000436100 807 ntBASIC16.07■□□□□ 0.16
HMGCS1Q01581 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 AC136632.2-201ENST00000512891 861 ntBASIC16.07■□□□□ 0.16
HMGCS1Q01581 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 FER1L4-210ENST00000615531 5998 ntBASIC16.07■□□□□ 0.16
HMGCS1Q01581 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HMGCS1Q01581 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGCS1Q01581 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 HNRNPDP1-201ENST00000439535 754 ntBASIC16.06■□□□□ 0.16
HMGCS1Q01581 FAAHP1-202ENST00000446499 1238 ntBASIC16.06■□□□□ 0.16
HMGCS1Q01581 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 CYP2A7P1-201ENST00000595391 815 ntBASIC16.06■□□□□ 0.16
HMGCS1Q01581 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.06■□□□□ 0.16
HMGCS1Q01581 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 PAUPAR-201ENST00000630360 2965 ntBASIC16.06■□□□□ 0.16
HMGCS1Q01581 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGCS1Q01581 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGCS1Q01581 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGCS1Q01581 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGCS1Q01581 MTHFR-217ENST00000641820 1569 ntBASIC16.05■□□□□ 0.16
HMGCS1Q01581 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 AL353732.1-201ENST00000569618 1459 ntBASIC16.05■□□□□ 0.16
HMGCS1Q01581 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGCS1Q01581 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms