Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL12P48061 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.4■□□□□ 0.22
CXCL12P48061 AC093724.1-201ENST00000448659 1027 ntBASIC16.4■□□□□ 0.22
CXCL12P48061 AC104989.1-201ENST00000519711 778 ntBASIC16.4■□□□□ 0.22
CXCL12P48061 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL12P48061 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.4■□□□□ 0.22
CXCL12P48061 TIMM17BP1-201ENST00000545713 516 ntBASIC16.4■□□□□ 0.22
CXCL12P48061 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.4■□□□□ 0.22
CXCL12P48061 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.4■□□□□ 0.22
CXCL12P48061 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.4■□□□□ 0.22
CXCL12P48061 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CXCL12P48061 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CXCL12P48061 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CXCL12P48061 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CXCL12P48061 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL12P48061 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.4■□□□□ 0.22
CXCL12P48061 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL12P48061 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL12P48061 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.4■□□□□ 0.22
CXCL12P48061 AL589702.1-201ENST00000641229 1509 ntBASIC16.4■□□□□ 0.22
CXCL12P48061 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
CXCL12P48061 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
CXCL12P48061 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.39■□□□□ 0.21
CXCL12P48061 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CXCL12P48061 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.39■□□□□ 0.21
CXCL12P48061 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CXCL12P48061 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.39■□□□□ 0.21
CXCL12P48061 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.39■□□□□ 0.21
CXCL12P48061 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CXCL12P48061 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.39■□□□□ 0.21
CXCL12P48061 AC104596.2-201ENST00000512793 793 ntBASIC16.39■□□□□ 0.21
CXCL12P48061 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
CXCL12P48061 SNX29P1-201ENST00000548357 1007 ntBASIC16.39■□□□□ 0.21
CXCL12P48061 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
CXCL12P48061 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 AC008735.3-201ENST00000596646 500 ntBASIC16.39■□□□□ 0.21
CXCL12P48061 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.39■□□□□ 0.21
CXCL12P48061 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 AL354751.1-201ENST00000412768 1863 ntBASIC16.39■□□□□ 0.21
CXCL12P48061 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CXCL12P48061 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL12P48061 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CXCL12P48061 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CXCL12P48061 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.38■□□□□ 0.21
CXCL12P48061 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
CXCL12P48061 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CXCL12P48061 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.38■□□□□ 0.21
CXCL12P48061 KRT43P-201ENST00000434019 910 ntBASIC16.38■□□□□ 0.21
CXCL12P48061 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL12P48061 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 AL139010.1-201ENST00000454878 894 ntBASIC16.38■□□□□ 0.21
CXCL12P48061 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.38■□□□□ 0.21
CXCL12P48061 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.38■□□□□ 0.21
CXCL12P48061 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.38■□□□□ 0.21
CXCL12P48061 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL12P48061 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 LINC02012-201ENST00000608206 1725 ntBASIC16.38■□□□□ 0.21
CXCL12P48061 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL12P48061 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms