Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXD3P31249 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.88□□□□□ -0.35
HOXD3P31249 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXD3P31249 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC12.88□□□□□ -0.35
HOXD3P31249 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXD3P31249 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC12.88□□□□□ -0.35
HOXD3P31249 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.88□□□□□ -0.35
HOXD3P31249 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HOXD3P31249 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HOXD3P31249 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HOXD3P31249 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC12.87□□□□□ -0.35
HOXD3P31249 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.87□□□□□ -0.35
HOXD3P31249 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.87□□□□□ -0.35
HOXD3P31249 SPDYE11-202ENST00000450699 704 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.87□□□□□ -0.35
HOXD3P31249 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HOXD3P31249 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.87□□□□□ -0.35
HOXD3P31249 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.87□□□□□ -0.35
HOXD3P31249 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.87□□□□□ -0.35
HOXD3P31249 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HOXD3P31249 GREM1-201ENST00000560677 623 ntTSL 4 BASIC12.87□□□□□ -0.35
HOXD3P31249 SPDYE9P-201ENST00000570642 692 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.87□□□□□ -0.35
HOXD3P31249 MIR4492-201ENST00000581627 80 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 AC026120.1-201ENST00000611536 926 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 SPDYE10P-202ENST00000612005 668 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 SPDYE8P-202ENST00000612377 668 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 Z92544.3-201ENST00000624747 417 ntBASIC12.87□□□□□ -0.35
HOXD3P31249 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
HOXD3P31249 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC12.87□□□□□ -0.35
HOXD3P31249 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
HOXD3P31249 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
HOXD3P31249 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.87□□□□□ -0.35
HOXD3P31249 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HOXD3P31249 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
HOXD3P31249 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
HOXD3P31249 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.86□□□□□ -0.35
HOXD3P31249 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.86□□□□□ -0.35
HOXD3P31249 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
HOXD3P31249 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC12.86□□□□□ -0.35
HOXD3P31249 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
HOXD3P31249 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 RNU1-129P-201ENST00000384064 167 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.86□□□□□ -0.35
HOXD3P31249 AL355306.1-201ENST00000415580 579 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 AL627223.1-201ENST00000416693 442 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.86□□□□□ -0.35
HOXD3P31249 COX20P2-201ENST00000452636 358 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.86□□□□□ -0.35
HOXD3P31249 AC093214.1-201ENST00000511688 1107 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 KRT8P48-201ENST00000515599 1220 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
HOXD3P31249 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
HOXD3P31249 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
HOXD3P31249 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.86□□□□□ -0.35
HOXD3P31249 AC093520.2-201ENST00000561830 333 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 MIR4745-201ENST00000577608 62 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.86□□□□□ -0.35
HOXD3P31249 U1.21-201ENST00000580816 167 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.86□□□□□ -0.35
HOXD3P31249 AC013467.2-201ENST00000605472 835 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 AL031055.1-201ENST00000606362 631 ntBASIC12.86□□□□□ -0.35
HOXD3P31249 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HOXD3P31249 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms