Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC069335.1-201ENST00000489972 472 ntBASIC14.13□□□□□ -0.15
USF1P22415 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.13□□□□□ -0.15
USF1P22415 IGHV3-62-201ENST00000520057 340 ntBASIC14.13□□□□□ -0.15
USF1P22415 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.13□□□□□ -0.15
USF1P22415 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.13□□□□□ -0.15
USF1P22415 AL135744.1-201ENST00000565098 629 ntBASIC14.13□□□□□ -0.15
USF1P22415 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.13□□□□□ -0.15
USF1P22415 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.13□□□□□ -0.15
USF1P22415 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.13□□□□□ -0.15
USF1P22415 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.13□□□□□ -0.15
USF1P22415 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC14.13□□□□□ -0.15
USF1P22415 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
USF1P22415 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USF1P22415 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.12□□□□□ -0.15
USF1P22415 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 PMS2P4-201ENST00000412466 1052 ntBASIC14.12□□□□□ -0.15
USF1P22415 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.12□□□□□ -0.15
USF1P22415 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 AC093214.1-201ENST00000511688 1107 ntBASIC14.12□□□□□ -0.15
USF1P22415 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.12□□□□□ -0.15
USF1P22415 DUX4L17-201ENST00000557360 1267 ntBASIC14.12□□□□□ -0.15
USF1P22415 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.12□□□□□ -0.15
USF1P22415 MIR4745-201ENST00000577608 62 ntBASIC14.12□□□□□ -0.15
USF1P22415 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.12□□□□□ -0.15
USF1P22415 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 LYSMD4-203ENST00000378904 2122 ntBASIC14.12□□□□□ -0.15
USF1P22415 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.12□□□□□ -0.15
USF1P22415 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USF1P22415 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 AC012569.1-201ENST00000591191 1524 ntBASIC14.11□□□□□ -0.15
USF1P22415 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
USF1P22415 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 INGX-202ENST00000489074 768 ntBASIC14.11□□□□□ -0.15
USF1P22415 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.11□□□□□ -0.15
USF1P22415 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.11□□□□□ -0.15
USF1P22415 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 AL512356.2-201ENST00000546955 174 ntBASIC14.11□□□□□ -0.15
USF1P22415 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 DUX4L27-201ENST00000554796 1261 ntBASIC14.11□□□□□ -0.15
USF1P22415 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 AC243562.1-201ENST00000560672 389 ntBASIC14.11□□□□□ -0.15
USF1P22415 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.11□□□□□ -0.15
USF1P22415 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 AJ011932.1-201ENST00000621707 465 ntBASIC14.11□□□□□ -0.15
USF1P22415 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
USF1P22415 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.11□□□□□ -0.15
USF1P22415 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
USF1P22415 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms