Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL11A1P12107 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL11A1P12107 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.63■□□□□ 0.57
COL11A1P12107 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.63■□□□□ 0.57
COL11A1P12107 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
COL11A1P12107 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.63■□□□□ 0.57
COL11A1P12107 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.63■□□□□ 0.57
COL11A1P12107 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.63■□□□□ 0.57
COL11A1P12107 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL11A1P12107 LINC01115-203ENST00000606068 577 ntBASIC18.63■□□□□ 0.57
COL11A1P12107 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.63■□□□□ 0.57
COL11A1P12107 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.62■□□□□ 0.57
COL11A1P12107 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.62■□□□□ 0.57
COL11A1P12107 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.62■□□□□ 0.57
COL11A1P12107 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL11A1P12107 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.62■□□□□ 0.57
COL11A1P12107 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
COL11A1P12107 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL11A1P12107 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.62■□□□□ 0.57
COL11A1P12107 NME2P1-201ENST00000426182 414 ntBASIC18.62■□□□□ 0.57
COL11A1P12107 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.62■□□□□ 0.57
COL11A1P12107 AC244107.1-201ENST00000442033 332 ntBASIC18.62■□□□□ 0.57
COL11A1P12107 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.62■□□□□ 0.57
COL11A1P12107 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL11A1P12107 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL11A1P12107 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.62■□□□□ 0.57
COL11A1P12107 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 AC138969.3-201ENST00000546612 1459 ntBASIC18.61■□□□□ 0.57
COL11A1P12107 AC138932.2-201ENST00000548268 1459 ntBASIC18.61■□□□□ 0.57
COL11A1P12107 AC126755.4-201ENST00000549796 1459 ntBASIC18.61■□□□□ 0.57
COL11A1P12107 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.61■□□□□ 0.57
COL11A1P12107 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.61■□□□□ 0.57
COL11A1P12107 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 SERBP1P3-201ENST00000459980 809 ntBASIC18.61■□□□□ 0.57
COL11A1P12107 AC093004.1-201ENST00000508850 424 ntBASIC18.61■□□□□ 0.57
COL11A1P12107 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL11A1P12107 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 AL391069.4-201ENST00000609583 481 ntBASIC18.61■□□□□ 0.57
COL11A1P12107 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.61■□□□□ 0.57
COL11A1P12107 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.61■□□□□ 0.57
COL11A1P12107 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
COL11A1P12107 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL11A1P12107 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
COL11A1P12107 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.6■□□□□ 0.57
COL11A1P12107 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
COL11A1P12107 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.6■□□□□ 0.57
COL11A1P12107 AC026979.3-201ENST00000607315 403 ntBASIC18.6■□□□□ 0.57
COL11A1P12107 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 AC005332.8-201ENST00000622750 2735 ntBASIC18.6■□□□□ 0.57
COL11A1P12107 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.6■□□□□ 0.57
COL11A1P12107 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.6■□□□□ 0.57
COL11A1P12107 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL11A1P12107 AL353779.1-201ENST00000434793 351 ntBASIC18.6■□□□□ 0.57
COL11A1P12107 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.6■□□□□ 0.57
COL11A1P12107 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.6■□□□□ 0.57
COL11A1P12107 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL11A1P12107 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL11A1P12107 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms