Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC10.17□□□□□ -0.78
APOBP04114 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
APOBP04114 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC10.17□□□□□ -0.78
APOBP04114 HNRNPA1P13-201ENST00000510646 963 ntBASIC10.17□□□□□ -0.78
APOBP04114 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC10.17□□□□□ -0.78
APOBP04114 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 TDH-203ENST00000531764 1110 ntBASIC10.17□□□□□ -0.78
APOBP04114 AC128714.1-201ENST00000637035 887 ntBASIC10.17□□□□□ -0.78
APOBP04114 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
APOBP04114 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC10.17□□□□□ -0.78
APOBP04114 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC10.17□□□□□ -0.78
APOBP04114 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 PCDHB17P-201ENST00000539533 2393 ntBASIC10.16□□□□□ -0.78
APOBP04114 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 BTBD6P1-201ENST00000412176 1267 ntBASIC10.16□□□□□ -0.78
APOBP04114 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 AC018735.1-201ENST00000437208 1502 ntBASIC10.16□□□□□ -0.78
APOBP04114 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 TMEM198B-204ENST00000484016 896 ntBASIC10.16□□□□□ -0.78
APOBP04114 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
APOBP04114 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC10.16□□□□□ -0.78
APOBP04114 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 CHMP4BP1-201ENST00000556017 588 ntBASIC10.16□□□□□ -0.78
APOBP04114 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
APOBP04114 AC026740.1-201ENST00000607068 791 ntBASIC10.16□□□□□ -0.78
APOBP04114 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
APOBP04114 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC10.16□□□□□ -0.78
APOBP04114 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC10.15□□□□□ -0.78
APOBP04114 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC10.15□□□□□ -0.78
APOBP04114 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
APOBP04114 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC10.15□□□□□ -0.78
APOBP04114 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms