Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TNFP01375 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.19■□□□□ 0.18
TNFP01375 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
TNFP01375 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TNFP01375 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.19■□□□□ 0.18
TNFP01375 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFP01375 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFP01375 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFP01375 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 AJ011932.1-201ENST00000621707 465 ntBASIC16.19■□□□□ 0.18
TNFP01375 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.19■□□□□ 0.18
TNFP01375 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.19■□□□□ 0.18
TNFP01375 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.19■□□□□ 0.18
TNFP01375 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 AL512652.2-201ENST00000625156 1716 ntBASIC16.19■□□□□ 0.18
TNFP01375 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TNFP01375 PCDHB18P-201ENST00000524813 2368 ntBASIC16.19■□□□□ 0.18
TNFP01375 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.19■□□□□ 0.18
TNFP01375 AL645608.8-201ENST00000606034 2086 ntBASIC16.18■□□□□ 0.18
TNFP01375 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TNFP01375 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.18■□□□□ 0.18
TNFP01375 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
TNFP01375 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TNFP01375 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.18■□□□□ 0.18
TNFP01375 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
TNFP01375 AL512638.1-201ENST00000457493 794 ntBASIC16.18■□□□□ 0.18
TNFP01375 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 AC097493.3-201ENST00000509725 367 ntBASIC16.18■□□□□ 0.18
TNFP01375 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.18■□□□□ 0.18
TNFP01375 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.18■□□□□ 0.18
TNFP01375 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.18■□□□□ 0.18
TNFP01375 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TNFP01375 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TNFP01375 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.18■□□□□ 0.18
TNFP01375 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.18■□□□□ 0.18
TNFP01375 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TNFP01375 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TNFP01375 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TNFP01375 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TNFP01375 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TNFP01375 FAM220BP-201ENST00000377689 816 ntBASIC16.17■□□□□ 0.18
TNFP01375 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.17■□□□□ 0.18
TNFP01375 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms