Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC011491.1-203ENST00000637688 543 ntBASIC12.68□□□□□ -0.38
COL6A5A8TX70 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 FGFR3P5-201ENST00000564496 886 ntBASIC12.68□□□□□ -0.38
COL6A5A8TX70 AC133539.2-201ENST00000604757 467 ntBASIC12.68□□□□□ -0.38
COL6A5A8TX70 COX6A1P2-201ENST00000620597 330 ntBASIC12.68□□□□□ -0.38
COL6A5A8TX70 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC12.68□□□□□ -0.38
COL6A5A8TX70 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
COL6A5A8TX70 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AHRR-211ENST00000515206 462 ntTSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC135983.4-201ENST00000564116 1262 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC006480.2-201ENST00000609770 1337 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AL031598.1-201ENST00000561511 1773 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 C2orf27AP3-201ENST00000434123 579 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC093433.1-201ENST00000458048 571 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 CYGB-203ENST00000589145 788 ntTSL 3 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 AL354718.3-201ENST00000616414 581 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 CR382287.1-201ENST00000623954 586 ntBASIC12.67□□□□□ -0.38
COL6A5A8TX70 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 PXK-206ENST00000463280 2825 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL6A5A8TX70 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.67□□□□□ -0.38
COL6A5A8TX70 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 AC009486.1-201ENST00000569860 813 ntBASIC12.66□□□□□ -0.38
COL6A5A8TX70 AC124283.3-201ENST00000570869 594 ntBASIC12.66□□□□□ -0.38
COL6A5A8TX70 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.66□□□□□ -0.38
COL6A5A8TX70 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL6A5A8TX70 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms