Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TNRC18P3-201ENST00000441896 2691 ntBASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 IFNA1-201ENST00000276927 863 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 AC098831.1-202ENST00000438821 336 ntBASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 EIF2S2P5-201ENST00000457635 968 ntBASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 CXCL1P1-201ENST00000502804 216 ntBASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 MIR4515-201ENST00000584082 81 ntBASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AL031731.1-201ENST00000642131 2094 ntBASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AC020765.3-201ENST00000613051 740 ntBASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 AL645728.2-201ENST00000641974 660 ntBASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PCDHB19P-201ENST00000570871 2371 ntBASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS9D1Q9Y2B5 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 AL671710.1-201ENST00000610245 2349 ntBASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 CYP2T1P-202ENST00000641596 2535 ntBASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
VPS9D1Q9Y2B5 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VPS9D1Q9Y2B5 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS9D1Q9Y2B5 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS9D1Q9Y2B5 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS9D1Q9Y2B5 CRYGEP-201ENST00000412192 528 ntBASIC16.58■□□□□ 0.24
VPS9D1Q9Y2B5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS9D1Q9Y2B5 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms