Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 LAGE3P1-201ENST00000425356 484 ntBASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 KRT18P27-201ENST00000427733 1299 ntBASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AC006557.2-201ENST00000592985 1240 ntBASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AC107918.4-202ENST00000641623 219 ntBASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMA1Q9UHB6 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 ARMC10P1-201ENST00000313754 855 ntBASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 AC073621.1-201ENST00000392730 636 ntBASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 HCG4-201ENST00000418983 998 ntBASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 RPS15P9-201ENST00000494093 319 ntBASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 AP001350.2-201ENST00000625104 1094 ntBASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 AC129492.6-201ENST00000611383 1305 ntBASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMA1Q9UHB6 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 AC112504.1-201ENST00000623415 1841 ntBASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 CDC14C-201ENST00000428251 1719 ntBASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 AC091304.2-201ENST00000564639 760 ntBASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 AC020765.3-201ENST00000613051 740 ntBASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 GGTLC5P-201ENST00000617623 998 ntBASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMA1Q9UHB6 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms