Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 SPDYE7P-202ENST00000420373 878 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 EGFEM1P-202ENST00000431685 1563 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 SLC25A39P2-201ENST00000537614 270 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 AC140878.1-201ENST00000565277 250 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 AC091167.2-201ENST00000579581 588 ntBASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TM9SF3Q9HD45 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 TREML5P-201ENST00000421694 576 ntBASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 AC190387.1-201ENST00000551683 408 ntBASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TM9SF3Q9HD45 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
TM9SF3Q9HD45 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 AC046158.3-201ENST00000624947 2558 ntBASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 IGHV3-42-201ENST00000520410 361 ntBASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.64■□□□□ 0.25
TM9SF3Q9HD45 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms