Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDH9Q9HC56 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 AC087163.2-201ENST00000457299 853 ntBASIC17.23■□□□□ 0.35
PCDH9Q9HC56 AC008667.4-201ENST00000607370 168 ntBASIC17.23■□□□□ 0.35
PCDH9Q9HC56 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
PCDH9Q9HC56 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 AL365203.3-201ENST00000609742 2057 ntBASIC17.22■□□□□ 0.35
PCDH9Q9HC56 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 IGHV3-65-201ENST00000523210 341 ntBASIC17.22■□□□□ 0.35
PCDH9Q9HC56 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 GGTLC5P-201ENST00000617623 998 ntBASIC17.22■□□□□ 0.35
PCDH9Q9HC56 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 REXO1L3P-201ENST00000622202 1288 ntBASIC17.22■□□□□ 0.35
PCDH9Q9HC56 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 AC002310.6-201ENST00000624451 1377 ntBASIC17.22■□□□□ 0.35
PCDH9Q9HC56 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PCDH9Q9HC56 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 KRT8P39-201ENST00000396270 1433 ntBASIC17.21■□□□□ 0.35
PCDH9Q9HC56 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 GGT4P-201ENST00000623672 1708 ntBASIC17.21■□□□□ 0.35
PCDH9Q9HC56 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 AL031731.1-201ENST00000642131 2094 ntBASIC17.21■□□□□ 0.35
PCDH9Q9HC56 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.21■□□□□ 0.35
PCDH9Q9HC56 AC091167.2-201ENST00000579581 588 ntBASIC17.21■□□□□ 0.35
PCDH9Q9HC56 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms