Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 C8orf49-201ENST00000525043 1968 ntBASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AL671710.1-201ENST00000610245 2349 ntBASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 KRT18P57-201ENST00000443599 1254 ntBASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 TNRC18P2-201ENST00000417666 2714 ntBASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 AL512652.2-201ENST00000625156 1716 ntBASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28BQ9BUN5 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 AC010491.1-201ENST00000563101 2797 ntBASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 TOP3BP1-201ENST00000420768 1380 ntBASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28BQ9BUN5 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28BQ9BUN5 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms