Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 AP001005.1-201ENST00000571755 1248 ntBASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.26■□□□□ 0.35
HERPUD2Q9BSE4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 AL356488.2-201ENST00000602755 427 ntBASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 ACTL9-202ENST00000612068 1252 ntBASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 AC010654.1-201ENST00000615722 808 ntBASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HERPUD2Q9BSE4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 HLA-A-201ENST00000376802 1334 ntBASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 AC108073.2-201ENST00000464002 357 ntBASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 AC093909.1-201ENST00000504731 1122 ntBASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 AC087641.1-201ENST00000557561 1021 ntBASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 AL049840.3-201ENST00000602669 611 ntBASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HERPUD2Q9BSE4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms