Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 EMD-201ENST00000369835 966 ntTSL 3 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PAWRP1-201ENST00000451083 565 ntBASIC12.53□□□□□ -0.4
LINC00477Q96M19 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 KRT8P39-201ENST00000396270 1433 ntBASIC12.53□□□□□ -0.4
LINC00477Q96M19 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00477Q96M19 AC092364.2-201ENST00000596710 2692 ntBASIC12.53□□□□□ -0.4
LINC00477Q96M19 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 AC008741.2-201ENST00000612792 3115 ntBASIC12.53□□□□□ -0.4
LINC00477Q96M19 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
LINC00477Q96M19 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.52□□□□□ -0.4
LINC00477Q96M19 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00477Q96M19 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00477Q96M19 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
LINC00477Q96M19 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC12.52□□□□□ -0.4
LINC00477Q96M19 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00477Q96M19 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
LINC00477Q96M19 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00477Q96M19 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
LINC00477Q96M19 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
LINC00477Q96M19 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00477Q96M19 GGT3P-204ENST00000453783 1664 ntBASIC12.52□□□□□ -0.4
LINC00477Q96M19 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00477Q96M19 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AC091167.2-201ENST00000579581 588 ntBASIC12.52□□□□□ -0.41
LINC00477Q96M19 MPDU1-223ENST00000582151 728 ntBASIC12.52□□□□□ -0.41
LINC00477Q96M19 MTDHP3-201ENST00000594186 672 ntBASIC12.52□□□□□ -0.41
LINC00477Q96M19 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC12.52□□□□□ -0.41
LINC00477Q96M19 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00477Q96M19 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00477Q96M19 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00477Q96M19 MIR600HG-201ENST00000449175 5984 ntBASIC12.51□□□□□ -0.41
LINC00477Q96M19 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00477Q96M19 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00477Q96M19 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00477Q96M19 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00477Q96M19 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.51□□□□□ -0.41
LINC00477Q96M19 SCARNA2-201ENST00000458748 420 ntBASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms