Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.94■□□□□ 0.3
SHROOM3Q8TF72 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 MCCD1P2-201ENST00000423228 335 ntBASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AC092902.6-201ENST00000641783 218 ntBASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM3Q8TF72 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 KRT18P28-201ENST00000453838 1332 ntBASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SHROOM3Q8TF72 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 KRT18P32-201ENST00000424695 1287 ntBASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 CNN2P11-201ENST00000429351 262 ntBASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms