Protein–RNA interactions for Protein: Q8N5R6

CCDC33, Coiled-coil domain-containing protein 33, humanhuman

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC33Q8N5R6 AC018695.7-201ENST00000624587 2492 ntBASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 AC093028.1-201ENST00000622998 982 ntBASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC33Q8N5R6 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC33Q8N5R6 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 AL603756.1-201ENST00000606511 2163 ntBASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 TSEN15P1-201ENST00000423257 515 ntBASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 AC092902.6-201ENST00000641783 218 ntBASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC33Q8N5R6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms