Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CCDC60Q8IWA6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CCDC60Q8IWA6 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC60Q8IWA6 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC60Q8IWA6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC60Q8IWA6 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 SPDYE7P-202ENST00000420373 878 ntBASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 KLF2P3-201ENST00000451977 1087 ntBASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 HLA-J-202ENST00000469281 1241 ntBASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 RARRES2P9-201ENST00000565168 469 ntBASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC60Q8IWA6 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 AC125807.1-201ENST00000483097 614 ntBASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 UBALD1-205ENST00000590891 2641 ntBASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCDC60Q8IWA6 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 HLA-A-202ENST00000376806 1854 ntBASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC60Q8IWA6 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms