Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 AC103564.2-201ENST00000432853 1299 ntBASIC16.12■□□□□ 0.17
RNF220Q5VTB9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 VENTXP7-201ENST00000475503 772 ntBASIC16.12■□□□□ 0.17
RNF220Q5VTB9 FAM86EP-206ENST00000510506 987 ntBASIC16.12■□□□□ 0.17
RNF220Q5VTB9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF220Q5VTB9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.11■□□□□ 0.17
RNF220Q5VTB9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 AC109462.3-201ENST00000573934 613 ntBASIC16.11■□□□□ 0.17
RNF220Q5VTB9 NTF6B-201ENST00000591913 560 ntBASIC16.11■□□□□ 0.17
RNF220Q5VTB9 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF220Q5VTB9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RNF220Q5VTB9 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF220Q5VTB9 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF220Q5VTB9 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF220Q5VTB9 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF220Q5VTB9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms