Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.09■□□□□ 0.17
PCDH1Q08174 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.09■□□□□ 0.17
PCDH1Q08174 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDH1Q08174 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDH1Q08174 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDH1Q08174 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH1Q08174 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PCDH1Q08174 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH1Q08174 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.17
PCDH1Q08174 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH1Q08174 LINC01144-201ENST00000626198 1710 ntBASIC16.08■□□□□ 0.17
PCDH1Q08174 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH1Q08174 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.08■□□□□ 0.17
PCDH1Q08174 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH1Q08174 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDH1Q08174 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH1Q08174 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PCDH1Q08174 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 IGLL3P-201ENST00000412472 434 ntBASIC16.08■□□□□ 0.16
PCDH1Q08174 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDH1Q08174 AC009078.2-202ENST00000463353 338 ntBASIC16.08■□□□□ 0.16
PCDH1Q08174 RNA5SP415-201ENST00000517246 115 ntBASIC16.08■□□□□ 0.16
PCDH1Q08174 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH1Q08174 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH1Q08174 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
PCDH1Q08174 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDH1Q08174 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
PCDH1Q08174 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
PCDH1Q08174 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
PCDH1Q08174 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDH1Q08174 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PCDH1Q08174 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 HMGA1P7-201ENST00000406908 502 ntBASIC16.07■□□□□ 0.16
PCDH1Q08174 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
PCDH1Q08174 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
PCDH1Q08174 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDH1Q08174 AC096734.2-201ENST00000562054 433 ntBASIC16.07■□□□□ 0.16
PCDH1Q08174 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDH1Q08174 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 ALOX12P2-203ENST00000570921 1945 ntBASIC16.07■□□□□ 0.16
PCDH1Q08174 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDH1Q08174 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
PCDH1Q08174 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDH1Q08174 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms