Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
RNF4P78317 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.43■□□□□ 0.06
RNF4P78317 AC078925.2-201ENST00000624013 1973 ntBASIC15.43■□□□□ 0.06
RNF4P78317 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
RNF4P78317 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
RNF4P78317 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
RNF4P78317 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RNF4P78317 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
RNF4P78317 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RNF4P78317 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RNF4P78317 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RNF4P78317 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RNF4P78317 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.42■□□□□ 0.06
RNF4P78317 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.42■□□□□ 0.06
RNF4P78317 SPDYE11-202ENST00000450699 704 ntBASIC15.42■□□□□ 0.06
RNF4P78317 RN7SL589P-201ENST00000481268 310 ntBASIC15.42■□□□□ 0.06
RNF4P78317 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.42■□□□□ 0.06
RNF4P78317 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.42■□□□□ 0.06
RNF4P78317 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.42■□□□□ 0.06
RNF4P78317 SNHG9-202ENST00000564014 471 ntBASIC15.42■□□□□ 0.06
RNF4P78317 AL135744.1-201ENST00000565098 629 ntBASIC15.42■□□□□ 0.06
RNF4P78317 SPDYE9P-201ENST00000570642 692 ntBASIC15.42■□□□□ 0.06
RNF4P78317 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.42■□□□□ 0.06
RNF4P78317 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.42■□□□□ 0.06
RNF4P78317 SPDYE10P-202ENST00000612005 668 ntBASIC15.42■□□□□ 0.06
RNF4P78317 SPDYE8P-202ENST00000612377 668 ntBASIC15.42■□□□□ 0.06
RNF4P78317 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.42■□□□□ 0.06
RNF4P78317 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
RNF4P78317 AC105339.1-204ENST00000636249 355 ntBASIC15.42■□□□□ 0.06
RNF4P78317 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.42■□□□□ 0.06
RNF4P78317 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
RNF4P78317 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RNF4P78317 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.42■□□□□ 0.06
RNF4P78317 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.42■□□□□ 0.06
RNF4P78317 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 AC006538.1-201ENST00000567905 1585 ntBASIC15.41■□□□□ 0.06
RNF4P78317 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 AC106886.4-201ENST00000623557 2502 ntBASIC15.41■□□□□ 0.06
RNF4P78317 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 AL512652.2-201ENST00000625156 1716 ntBASIC15.41■□□□□ 0.06
RNF4P78317 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.41■□□□□ 0.06
RNF4P78317 TIMM8BP1-201ENST00000452384 211 ntBASIC15.41■□□□□ 0.06
RNF4P78317 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.41■□□□□ 0.06
RNF4P78317 HLA-J-202ENST00000469281 1241 ntBASIC15.41■□□□□ 0.06
RNF4P78317 AP000344.2-201ENST00000512987 629 ntBASIC15.41■□□□□ 0.06
RNF4P78317 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.41■□□□□ 0.06
RNF4P78317 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 AL596442.2-201ENST00000610240 980 ntBASIC15.41■□□□□ 0.06
RNF4P78317 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms