Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC11.84□□□□□ -0.51
RPL39P62891 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC11.84□□□□□ -0.51
RPL39P62891 FGF14-AS2-201ENST00000606448 1074 ntBASIC11.84□□□□□ -0.51
RPL39P62891 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC11.84□□□□□ -0.51
RPL39P62891 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC11.84□□□□□ -0.51
RPL39P62891 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC11.84□□□□□ -0.51
RPL39P62891 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC11.84□□□□□ -0.51
RPL39P62891 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC11.84□□□□□ -0.51
RPL39P62891 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC11.84□□□□□ -0.51
RPL39P62891 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
RPL39P62891 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
RPL39P62891 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC11.84□□□□□ -0.51
RPL39P62891 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
RPL39P62891 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.51
RPL39P62891 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
RPL39P62891 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
RPL39P62891 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
RPL39P62891 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC11.83□□□□□ -0.52
RPL39P62891 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 GUSBP12-201ENST00000513727 720 ntBASIC11.83□□□□□ -0.52
RPL39P62891 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 MIR4497-201ENST00000583208 89 ntBASIC11.83□□□□□ -0.52
RPL39P62891 AC005336.2-201ENST00000593183 939 ntBASIC11.83□□□□□ -0.52
RPL39P62891 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 GGT4P-201ENST00000623672 1708 ntBASIC11.83□□□□□ -0.52
RPL39P62891 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC11.83□□□□□ -0.52
RPL39P62891 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC11.83□□□□□ -0.52
RPL39P62891 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
RPL39P62891 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
RPL39P62891 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC11.82□□□□□ -0.52
RPL39P62891 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms