Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA3P55318 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC012618.2-201ENST00000428058 849 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 AC128688.1-201ENST00000487626 519 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC122714.2-201ENST00000502787 707 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC12.57□□□□□ -0.4
FOXA3P55318 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.57□□□□□ -0.4
FOXA3P55318 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC233702.5-201ENST00000584107 538 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 STK25P1-201ENST00000585406 838 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
FOXA3P55318 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 AL391807.1-203ENST00000604392 2365 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 AC013268.4-201ENST00000637413 2228 ntBASIC12.57□□□□□ -0.4
FOXA3P55318 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
FOXA3P55318 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA3P55318 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA3P55318 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
FOXA3P55318 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
FOXA3P55318 ID1-201ENST00000376105 1233 ntBASIC12.56□□□□□ -0.4
FOXA3P55318 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 RPS20-210ENST00000523936 899 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.56□□□□□ -0.4
FOXA3P55318 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 PRAL-201ENST00000624952 3286 ntBASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms