Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 PCDHA14-201ENST00000506751 2298 ntBASIC17.87■□□□□ 0.45
VCPP55072 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VCPP55072 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VCPP55072 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VCPP55072 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
VCPP55072 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.86■□□□□ 0.45
VCPP55072 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.86■□□□□ 0.45
VCPP55072 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.86■□□□□ 0.45
VCPP55072 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.86■□□□□ 0.45
VCPP55072 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.86■□□□□ 0.45
VCPP55072 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.86■□□□□ 0.45
VCPP55072 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.86■□□□□ 0.45
VCPP55072 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 OR7E47P-204ENST00000575924 449 ntBASIC17.86■□□□□ 0.45
VCPP55072 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 AC092068.3-201ENST00000587894 2016 ntBASIC17.86■□□□□ 0.45
VCPP55072 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VCPP55072 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
VCPP55072 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VCPP55072 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.85■□□□□ 0.45
VCPP55072 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
VCPP55072 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.85■□□□□ 0.45
VCPP55072 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
VCPP55072 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.85■□□□□ 0.45
VCPP55072 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.85■□□□□ 0.45
VCPP55072 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.85■□□□□ 0.45
VCPP55072 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.85■□□□□ 0.45
VCPP55072 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.85■□□□□ 0.45
VCPP55072 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.85■□□□□ 0.45
VCPP55072 AC023141.13-201ENST00000604991 943 ntBASIC17.85■□□□□ 0.45
VCPP55072 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
VCPP55072 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
VCPP55072 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VCPP55072 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.84■□□□□ 0.45
VCPP55072 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms