Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC068587.10-201ENST00000641210 219 ntBASIC17.55■□□□□ 0.4
COL4A4P53420 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 AL645728.1-201ENST00000366221 2101 ntBASIC17.55■□□□□ 0.4
COL4A4P53420 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL4A4P53420 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
COL4A4P53420 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A4P53420 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A4P53420 MIR4538-201ENST00000581377 78 ntBASIC17.55■□□□□ 0.4
COL4A4P53420 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.55■□□□□ 0.4
COL4A4P53420 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A4P53420 SRD5A3P1-201ENST00000603021 949 ntBASIC17.55■□□□□ 0.4
COL4A4P53420 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A4P53420 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.54■□□□□ 0.4
COL4A4P53420 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL4A4P53420 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 CROCCP4-201ENST00000457096 498 ntBASIC17.54■□□□□ 0.4
COL4A4P53420 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.54■□□□□ 0.4
COL4A4P53420 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.54■□□□□ 0.4
COL4A4P53420 WFDC1-204ENST00000613603 549 ntBASIC17.54■□□□□ 0.4
COL4A4P53420 RPSAP52-203ENST00000622976 1023 ntBASIC17.54■□□□□ 0.4
COL4A4P53420 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL4A4P53420 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL4A4P53420 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.53■□□□□ 0.4
COL4A4P53420 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
COL4A4P53420 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL4A4P53420 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.53■□□□□ 0.4
COL4A4P53420 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
COL4A4P53420 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.53■□□□□ 0.4
COL4A4P53420 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.53■□□□□ 0.4
COL4A4P53420 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.53■□□□□ 0.4
COL4A4P53420 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 AC006277.1-201ENST00000624348 1610 ntBASIC17.53■□□□□ 0.4
COL4A4P53420 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL4A4P53420 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.53■□□□□ 0.4
COL4A4P53420 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.53■□□□□ 0.4
COL4A4P53420 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.52■□□□□ 0.4
COL4A4P53420 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL4A4P53420 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.52■□□□□ 0.4
COL4A4P53420 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
COL4A4P53420 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.52■□□□□ 0.4
COL4A4P53420 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms