Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 KRT18P67-201ENST00000432816 1264 ntBASIC17.61■□□□□ 0.41
LIG3P49916 AF186996.4-201ENST00000467186 377 ntBASIC17.61■□□□□ 0.41
LIG3P49916 RNPS1P1-201ENST00000507437 918 ntBASIC17.61■□□□□ 0.41
LIG3P49916 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.61■□□□□ 0.41
LIG3P49916 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.61■□□□□ 0.41
LIG3P49916 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.61■□□□□ 0.41
LIG3P49916 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.6■□□□□ 0.41
LIG3P49916 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.6■□□□□ 0.41
LIG3P49916 AC073648.2-201ENST00000510116 352 ntBASIC17.6■□□□□ 0.41
LIG3P49916 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.6■□□□□ 0.41
LIG3P49916 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 AC019129.2-201ENST00000609837 1235 ntBASIC17.6■□□□□ 0.41
LIG3P49916 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 AC148477.8-201ENST00000624298 468 ntBASIC17.6■□□□□ 0.41
LIG3P49916 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.6■□□□□ 0.41
LIG3P49916 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIG3P49916 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIG3P49916 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LIG3P49916 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LIG3P49916 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.59■□□□□ 0.41
LIG3P49916 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.59■□□□□ 0.41
LIG3P49916 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.59■□□□□ 0.41
LIG3P49916 AC109462.3-201ENST00000573934 613 ntBASIC17.59■□□□□ 0.41
LIG3P49916 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 NKAPP1-205ENST00000585790 367 ntBASIC17.59■□□□□ 0.41
LIG3P49916 AL773604.1-201ENST00000617417 272 ntBASIC17.59■□□□□ 0.41
LIG3P49916 AC073592.5-201ENST00000624854 528 ntBASIC17.59■□□□□ 0.41
LIG3P49916 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LIG3P49916 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
LIG3P49916 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.59■□□□□ 0.41
LIG3P49916 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms