Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 AL031731.1-201ENST00000642131 2094 ntBASIC15.67■□□□□ 0.1
LDB3O75112 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
LDB3O75112 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 AC004832.2-201ENST00000426397 482 ntBASIC15.67■□□□□ 0.1
LDB3O75112 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.67■□□□□ 0.1
LDB3O75112 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 AL009183.1-201ENST00000603760 355 ntBASIC15.67■□□□□ 0.1
LDB3O75112 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.67■□□□□ 0.1
LDB3O75112 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.67■□□□□ 0.1
LDB3O75112 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.67■□□□□ 0.1
LDB3O75112 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LDB3O75112 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.67■□□□□ 0.1
LDB3O75112 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 YBX2P1-201ENST00000394192 760 ntBASIC15.66■□□□□ 0.1
LDB3O75112 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 MCCD1P2-201ENST00000423228 335 ntBASIC15.66■□□□□ 0.1
LDB3O75112 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.66■□□□□ 0.1
LDB3O75112 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.66■□□□□ 0.1
LDB3O75112 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.66■□□□□ 0.1
LDB3O75112 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.66■□□□□ 0.1
LDB3O75112 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.66■□□□□ 0.1
LDB3O75112 AP002472.1-201ENST00000577490 586 ntBASIC15.66■□□□□ 0.1
LDB3O75112 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LDB3O75112 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.66■□□□□ 0.1
LDB3O75112 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
LDB3O75112 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.65■□□□□ 0.1
LDB3O75112 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
LDB3O75112 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LDB3O75112 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LDB3O75112 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
LDB3O75112 ALOX12P2-203ENST00000570921 1945 ntBASIC15.65■□□□□ 0.1
LDB3O75112 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms